{
  "_id": "6a1ee139b401979e7341098e",
  "Package": "aods3",
  "Version": "0.6",
  "Title": "Analysis of Overdispersed Data using S3 Methods",
  "Authors@R": "c(\nperson(\"Matthieu\", \"Lesnoff\", role = \"aut\", email = \"matthieu.lesnoff@cirad.fr\"),\nperson(\"Renaud\", \"Lancelot\", role = \"aut\", email = \"renaud.lancelot@cirad.fr\"),\nperson(\"Aurélie\", \"Siberchicot\", role = c(\"ctb\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\"))\n)",
  "Description": "Provides functions to analyse overdispersed counts or\nproportions. These functions should be considered as\ncomplements to more sophisticated methods such as generalized\nestimating equations (GEE) or generalized linear mixed effect\nmodels (GLMM). aods3 is an S3 re-implementation of the\ndeprecated S4 package aod.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "URL": "https://github.com/lbbe-software/aods3",
  "Repository": "https://lbbe-software.r-universe.dev",
  "Date/Publication": "2026-01-07 08:13:05 UTC",
  "RemoteUrl": "https://github.com/lbbe-software/aods3",
  "RemoteRef": "HEAD",
  "RemoteSha": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-20 07:05:12 UTC",
    "User": "root"
  },
  "Author": "Matthieu Lesnoff [aut],\nRenaud Lancelot [aut],\nAurélie Siberchicot [ctb, cre] (ORCID:\n<https://orcid.org/0000-0002-7638-8318>)",
  "Maintainer": "Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>",
  "MD5sum": "b618ff6a6e3c31bc650dd77c3934c276",
  "_user": "lbbe-software",
  "_type": "src",
  "_file": "aods3_0.6.tar.gz",
  "_fileid": "1a59b150cf7b589ec138ad7cc1677a1879cb8c0eb55809a40c339de987039598",
  "_filesize": 316378,
  "_sha256": "1a59b150cf7b589ec138ad7cc1677a1879cb8c0eb55809a40c339de987039598",
  "_created": "2026-05-20T07:05:12.000Z",
  "_published": "2026-06-02T13:57:13.943Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79087837788,
      "time": 122,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7103407352"
    },
    {
      "job": 79087837857,
      "time": 104,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7103402267"
    },
    {
      "job": 79087837451,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7103402674"
    },
    {
      "job": 79087838478,
      "time": 88,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7103397837"
    },
    {
      "job": 79087836968,
      "time": 147,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7103371617"
    },
    {
      "job": 79087836735,
      "time": 88,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7359766920"
    },
    {
      "job": 79087837659,
      "time": 91,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7103398607"
    },
    {
      "job": 79087838071,
      "time": 80,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7103395581"
    },
    {
      "job": 79087837541,
      "time": 90,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7103398513"
    }
  ],
  "_buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/lbbe-software/aods3",
  "_commit": {
    "id": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
    "author": "Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>",
    "committer": "Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>",
    "message": "Update version number\n",
    "time": 1767773585
  },
  "_maintainer": {
    "name": "Aurélie Siberchicot",
    "email": "aurelie.siberchicot@univ-lyon1.fr",
    "login": "aursiber",
    "description": "",
    "uuid": 13218953,
    "orcid": "0000-0002-7638-8318"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "boot",
      "role": "Suggests"
    },
    {
      "package": "lme4",
      "role": "Suggests"
    }
  ],
  "_owner": "lbbe-software",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2026-02",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "aursiber",
      "count": 18,
      "uuid": 13218953
    }
  ],
  "_userbio": {
    "uuid": 131469035,
    "type": "organization",
    "name": "lbbe-software"
  },
  "_downloads": {
    "count": 3884,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/aods3"
  },
  "_mentions": 7,
  "_devurl": "https://github.com/lbbe-software/aods3",
  "_searchresults": 52,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/aods3.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/lbbe-software/aods3",
  "_realowner": "lbbe-software",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3-9",
      "date": "2013-05-07"
    },
    {
      "version": "0.3-11",
      "date": "2013-05-29"
    },
    {
      "version": "0.4.0",
      "date": "2013-06-15"
    },
    {
      "version": "0.4-1",
      "date": "2013-06-18"
    },
    {
      "version": "0.4-1.1",
      "date": "2018-08-30"
    },
    {
      "version": "0.4-1.2",
      "date": "2022-07-08"
    },
    {
      "version": "0.5",
      "date": "2024-11-06"
    },
    {
      "version": "0.6",
      "date": "2026-01-19"
    }
  ],
  "_exports": [
    "AIC.aodml",
    "anova.aodml",
    "anova.aodql",
    "aodml",
    "aodql",
    "coef.aodml",
    "coef.aodql",
    "deviance.aodml",
    "deviance.aodql",
    "df.residual.aodml",
    "df.residual.aodql",
    "drs",
    "fitted.aodml",
    "fitted.aodql",
    "gof",
    "gof.default",
    "iccbin",
    "invlink",
    "link",
    "logLik.aodml",
    "logLik.aodql",
    "predict.aodml",
    "predict.aodql",
    "print.anova.aodml",
    "print.aodml",
    "print.aodql",
    "print.drs",
    "print.gof",
    "print.iccbin",
    "print.summary.aodml",
    "print.varbin",
    "print.wald.test",
    "residuals.aodml",
    "residuals.aodql",
    "splitbin",
    "summary.aodml",
    "summary.aodql",
    "varbin",
    "vcov.aodml",
    "vcov.aodql",
    "wald.test"
  ],
  "_datasets": [
    {
      "name": "antibio",
      "title": "Antibiotics against Shipping Fever in Calves",
      "object": "antibio",
      "file": "antibio.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "treatment",
        "n",
        "m"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "cohorts",
      "title": "Age, Period and Cohort Effects for Vital Rates",
      "object": "cohorts",
      "file": "cohorts.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "period",
        "age",
        "m",
        "n"
      ],
      "rows": 49,
      "table": true,
      "tojson": true
    },
    {
      "name": "dja",
      "title": "Mortality of Djallonke Lambs in Senegal",
      "object": "dja",
      "file": "dja.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "village",
        "herd",
        "n",
        "trisk",
        "m"
      ],
      "rows": 75,
      "table": true,
      "tojson": true
    },
    {
      "name": "lizards",
      "title": "A Comparison of Site Preferences of Two Species of Lizard",
      "object": "lizards",
      "file": "lizards.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Site",
        "Diameter",
        "Height",
        "Time",
        "grahami",
        "opalinus"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "mice",
      "title": "Pregnant Female Mice Experiment",
      "object": "mice",
      "file": "mice.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "n",
        "m"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "orob1",
      "title": "Germination Data",
      "object": "orob1",
      "file": "orob1.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "dilution",
        "n",
        "m"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "orob2",
      "title": "Germination Data",
      "object": "orob2",
      "file": "orob2.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "seed",
        "root",
        "n",
        "m"
      ],
      "rows": 21,
      "table": true,
      "tojson": true
    },
    {
      "name": "rabbits",
      "title": "Rabbits Foetuses Survival Experiment",
      "object": "rabbits",
      "file": "rabbits.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "n",
        "m"
      ],
      "rows": 84,
      "table": true,
      "tojson": true
    },
    {
      "name": "rats",
      "title": "Rats Diet Experiment",
      "object": "rats",
      "file": "rats.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "n",
        "m"
      ],
      "rows": 32,
      "table": true,
      "tojson": true
    },
    {
      "name": "salmonella",
      "title": "Salmonella Reverse Mutagenicity Assay",
      "object": "salmonella",
      "file": "salmonella.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "dose",
        "m"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "antibio",
      "title": "Antibiotics against Shipping Fever in Calves",
      "topics": [
        "antibio"
      ]
    },
    {
      "page": "aodml",
      "title": "ML Estimation of Generalized Linear Models for Overdispersed Count Data",
      "topics": [
        "AIC.aodml",
        "anova.aodml",
        "aodml",
        "coef.aodml",
        "deviance.aodml",
        "df.residual.aodml",
        "fitted.aodml",
        "logLik.aodml",
        "predict.aodml",
        "print.anova.aodml",
        "print.aodml",
        "print.summary.aodml",
        "residuals.aodml",
        "summary.aodml",
        "vcov.aodml"
      ]
    },
    {
      "page": "aodql",
      "title": "QL/MM Estimation of Generalized Linear Models for Overdispersed Count Data",
      "topics": [
        "anova.aodql",
        "aodql",
        "coef.aodql",
        "deviance.aodql",
        "df.residual.aodql",
        "fitted.aodql",
        "logLik.aodql",
        "predict.aodql",
        "print.aodql",
        "residuals.aodql",
        "summary.aodql",
        "vcov.aodql"
      ]
    },
    {
      "page": "aod-pkg",
      "title": "Analysis of Overdispersed Data",
      "topics": [
        "aods3",
        "aods3-pkg"
      ]
    },
    {
      "page": "cohorts",
      "title": "Age, Period and Cohort Effects for Vital Rates",
      "topics": [
        "cohorts"
      ]
    },
    {
      "page": "dja",
      "title": "Mortality of Djallonke Lambs in Senegal",
      "topics": [
        "dja"
      ]
    },
    {
      "page": "drs",
      "title": "Test of Proportion Homogeneity between Groups using Donner's and Rao-Scott's Adjustments",
      "topics": [
        "drs",
        "print.drs"
      ]
    },
    {
      "page": "gof",
      "title": "Test of Goodness-of-Fit of Models for Count data",
      "topics": [
        "gof",
        "gof.default",
        "print.gof"
      ]
    },
    {
      "page": "iccbin",
      "title": "Intra-Cluster Correlation for Clustered Binomial data",
      "topics": [
        "iccbin",
        "print.iccbin"
      ]
    },
    {
      "page": "invlink",
      "title": "Transformation from the Link Scale to the Observation Scale",
      "topics": [
        "invlink"
      ]
    },
    {
      "page": "link",
      "title": "Transformation from the Observation Scale to the Link Scale",
      "topics": [
        "link"
      ]
    },
    {
      "page": "lizards",
      "title": "A Comparison of Site Preferences of Two Species of Lizard",
      "topics": [
        "lizards"
      ]
    },
    {
      "page": "mice",
      "title": "Pregnant Female Mice Experiment",
      "topics": [
        "mice"
      ]
    },
    {
      "page": "orob1",
      "title": "Germination Data",
      "topics": [
        "orob1"
      ]
    },
    {
      "page": "orob2",
      "title": "Germination Data",
      "topics": [
        "orob2"
      ]
    },
    {
      "page": "rabbits",
      "title": "Rabbits Foetuses Survival Experiment",
      "topics": [
        "rabbits"
      ]
    },
    {
      "page": "rats",
      "title": "Rats Diet Experiment",
      "topics": [
        "rats"
      ]
    },
    {
      "page": "salmonella",
      "title": "Salmonella Reverse Mutagenicity Assay",
      "topics": [
        "salmonella"
      ]
    },
    {
      "page": "splitbin",
      "title": "Split Grouped Data Into Individual Data",
      "topics": [
        "splitbin"
      ]
    },
    {
      "page": "varbin",
      "title": "Estimate of a Probability from Clustered Binomial Data",
      "topics": [
        "print.varbin",
        "varbin"
      ]
    },
    {
      "page": "wald.test",
      "title": "Wald Test for Model Coefficients",
      "topics": [
        "print.wald.test",
        "wald.test"
      ]
    }
  ],
  "_readme": "https://github.com/lbbe-software/aods3/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 5.3264718639407045,
  "_indexed": true,
  "_nocasepkg": "aods3",
  "_universes": [
    "lbbe-software",
    "aursiber"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.6",
      "date": "2026-05-20T07:07:11.000Z",
      "distro": "noble",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "6d1ac00eb217b1a3beeeb0e1110ceab7961a7e9406d3c609989b1046aa0d1b25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.6",
      "date": "2026-05-20T07:06:58.000Z",
      "distro": "noble",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "47d6f059251053d8ffe4a610fd94b26ac5b6695cb59e02281e1aa97b9aed11fd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.6",
      "date": "2026-05-20T07:07:00.000Z",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "d857a5461f499c3cac7054942905796407572fc93d2e31fdf4d9b800f34573b1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.6",
      "date": "2026-05-20T07:06:46.000Z",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "352a6ea5fd3909a137d8d8cfda706ffddace93aa905cca5d462f0d4db355265e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.6",
      "date": "2026-05-20T07:06:38.000Z",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "f8aed786cb82065f90afbcf587fedde02512889e22804c702c6c3b6dbf0ed669",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.6",
      "date": "2026-05-20T07:06:30.000Z",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "1c47bd7015b774140fb033446fc81d735090e95c87a78c4dce6c08c487b60b9e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.6",
      "date": "2026-05-20T07:06:40.000Z",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "9dc6426468da8e525db7e143a19625f8edc4f2fc8ddc488340e96938e0ae42b0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.6",
      "date": "2026-06-02T13:56:34.000Z",
      "commit": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
      "fileid": "4772a08cbc451cf19e739c8eb901ebd44a0b932fe34fac460f2ae55ccbab02a6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lbbe-software/actions/runs/26146916385"
    }
  ]
}