{
  "_id": "6a49affbc8f6781c04fb86e3",
  "Package": "aods3",
  "Version": "0.6",
  "Title": "Analysis of Overdispersed Data using S3 Methods",
  "Authors@R": "c(\nperson(\"Matthieu\", \"Lesnoff\", role = \"aut\", email = \"matthieu.lesnoff@cirad.fr\"),\nperson(\"Renaud\", \"Lancelot\", role = \"aut\", email = \"renaud.lancelot@cirad.fr\"),\nperson(\"Aurélie\", \"Siberchicot\", role = c(\"ctb\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\"))\n)",
  "Description": "Provides functions to analyse overdispersed counts or\nproportions. These functions should be considered as\ncomplements to more sophisticated methods such as generalized\nestimating equations (GEE) or generalized linear mixed effect\nmodels (GLMM). aods3 is an S3 re-implementation of the\ndeprecated S4 package aod.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "URL": "https://github.com/lbbe-software/aods3",
  "Repository": "https://lbbe-software.r-universe.dev",
  "Date/Publication": "2026-01-07 08:13:05 UTC",
  "RemoteUrl": "https://github.com/lbbe-software/aods3",
  "RemoteRef": "HEAD",
  "RemoteSha": "518e38b7c016fb0a0a8388d228aee4e15e2f2c5a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-19 10:20:26 UTC",
    "User": "root"
  },
  "Author": "Matthieu Lesnoff [aut],\nRenaud Lancelot [aut],\nAurélie Siberchicot [ctb, cre] (ORCID:\n<https://orcid.org/0000-0002-7638-8318>)",
  "Maintainer": "Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>",
  "_user": "lbbe-software",
  "_type": "src",
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  "_expires": "2026-10-13T01:14:33.000Z",
  "_created": "2026-06-19T10:20:26.000Z",
  "_published": "2026-07-05T01:14:35.106Z",
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  "_devurl": "https://github.com/lbbe-software/aods3",
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
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    "extra/contents.json",
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  "_realowner": "lbbe-software",
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      "date": "2024-11-06"
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      "date": "2026-01-19"
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    "anova.aodml",
    "anova.aodql",
    "aodml",
    "aodql",
    "coef.aodml",
    "coef.aodql",
    "deviance.aodml",
    "deviance.aodql",
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    "df.residual.aodql",
    "drs",
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    "gof.default",
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    "invlink",
    "link",
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    "logLik.aodql",
    "predict.aodml",
    "predict.aodql",
    "print.anova.aodml",
    "print.aodml",
    "print.aodql",
    "print.drs",
    "print.gof",
    "print.iccbin",
    "print.summary.aodml",
    "print.varbin",
    "print.wald.test",
    "residuals.aodml",
    "residuals.aodql",
    "splitbin",
    "summary.aodml",
    "summary.aodql",
    "varbin",
    "vcov.aodml",
    "vcov.aodql",
    "wald.test"
  ],
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      "title": "Antibiotics against Shipping Fever in Calves",
      "object": "antibio",
      "file": "antibio.rda",
      "class": [
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      ],
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      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Age, Period and Cohort Effects for Vital Rates",
      "object": "cohorts",
      "file": "cohorts.rda",
      "class": [
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      ],
      "fields": [
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        "age",
        "m",
        "n"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Mortality of Djallonke Lambs in Senegal",
      "object": "dja",
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      ],
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        "Time",
        "grahami",
        "opalinus"
      ],
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      "table": true,
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    },
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      "class": [
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      ],
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        "m"
      ],
      "rows": 20,
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      "tojson": true
    },
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      "title": "Germination Data",
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      "class": [
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      ],
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      "title": "Antibiotics against Shipping Fever in Calves",
      "topics": [
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      ]
    },
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      "page": "aodml",
      "title": "ML Estimation of Generalized Linear Models for Overdispersed Count Data",
      "topics": [
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        "anova.aodml",
        "aodml",
        "coef.aodml",
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      "topics": [
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      "topics": [
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