{ "_id": "6a181a9eacfb0bcc41db0cb7", "Package": "MareyMap", "Title": "Estimation of Meiotic Recombination Rates Using Marey Maps", "Version": "1.3.10", "Authors@R": "c(\nperson(\"Gabriel\", \"Marais\", email = \"gabriel.marais@cnrs.fr\", role = \"aut\", comment = c(ORCID = \"0000-0003-2134-5967\")),\nperson(\"Clément\", \"Rezvoy\", role = \"aut\"),\nperson(\"Delphine\", \"Charif\", role = \"aut\"),\nperson(\"Laurent\", \"Gueguen\", role = \"aut\"),\nperson(\"Aurélie\", \"Siberchicot\", role = c(\"ctb\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\"))\n)", "License": "GPL (>= 2)", "Description": "Local recombination rates are graphically estimated across\na genome using Marey maps.", "BugReports": "https://github.com/lbbe-software/MareyMap/issues", "URL": "https://lbbe.univ-lyon1.fr/fr/mareymap\nhttps://lbbe-shiny.univ-lyon1.fr/MareyMapOnline/", "LazyData": "no", "Encoding": "UTF-8", "Repository": 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"Drosophila_melanogaster", "title": "The marey map for the species Drosophila melanogaster", "object": "Drosophila_melanogaster", "file": "Drosophila_melanogaster.rda", "class": [ "MapSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Homo_sapiens_female", "title": "The marey map for the species Homo sapiens (female, male and mean of the two)", "object": "Homo_sapiens_female", "file": "Homo_sapiens_female.rda", "class": [ "MapSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Homo_sapiens_male", "title": "The marey map for the species Homo sapiens (female, male and mean of the two)", "object": "Homo_sapiens_male", "file": "Homo_sapiens_male.rda", "class": [ "MapSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Homo_sapiens_mean", "title": "The marey map for the species Homo sapiens (female, male and mean of the two)", "object": "Homo_sapiens_mean", "file": "Homo_sapiens_mean.rda", "class": [ "MapSet" ], "fields": [], "table": false, 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"paramMin,InterpolationParam-method", "paramMin<-,InterpolationParam-method", "paramName,InterpolationParam-method", "paramName<-,InterpolationParam,character-method", "paramType,InterpolationParam-method", "paramType<-,InterpolationParam,character-method", "paramValues,InterpolationParam-method", "paramValues<-,InterpolationParam,vector-method" ] }, { "page": "InterpolationParam-methods", "title": "Methods for Function InterpolationParam in Package 'MareyMap'", "topics": [ "InterpolationParam,missing-method", "InterpolationParam-methods" ] }, { "page": "interpolations-methods", "title": "accessors for slot interpolations", "topics": [ "interpolations", "interpolations-methods", "interpolations<-", "interpolations<--methods" ] }, { "page": "MapCollection-class", "title": "Class \"MapCollection\"", "topics": [ "$,MapCollection-method", "+,MapCollection,MapCollection-method", "+,MapCollection,MapSet-method", "+,MapCollection,MareyMap-method", "-,MapCollection,character-method", 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markerValidity", "topics": [ "markerValidity", "markerValidity-methods", "markerValidity<-", "markerValidity<--methods" ] }, { "page": "MMLoess-class", "title": "Class \"MMLoess\". Interpolation method plug-in for MareyMap", "topics": [ "createOrder,MMLoess-method", "degree", "degree,MMLoess-method", "degree<-", "degree<-,MMLoess-method", "interpolate,MMLoess,MareyMap-method", "MMLoess", "MMLoess,missing-method", "MMLoess-class", "MMLoess-methods", "plot,MareyMap,MMLoess-method", "plotModel,MMLoess-method", "plotRate,MMLoess-method", "query,MMLoess,numeric-method", "span", "span,MMLoess-method", "span<-", "span<-,MMLoess-method", "userParam,MMLoess-method" ] }, { "page": "MMSlidingWindow-class", "title": "Class \"MMSlidingWindow\" Interpolation method plug-in for MareyMap", "topics": [ "createOrder,MMSlidingWindow-method", "interpolate,MMSlidingWindow,MareyMap-method", "MMSlidingWindow", "MMSlidingWindow,missing-method", "MMSlidingWindow-class", "MMSlidingWindow-methods", "plot,MareyMap,MMSlidingWindow-method", "plotModel,MMSlidingWindow-method", "plotRate,MMSlidingWindow-method", "query,MMSlidingWindow,numeric-method", "shift", "shift,MMSlidingWindow-method", 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"page": "name-Methods", "title": "Accessor for slot name.", "topics": [ "name", "name-methods", "name<-", "name<--methods" ] }, { "page": "paramDefault-methods", "title": "Accessors for slot paramDefault", "topics": [ "paramDefault", "paramDefault-methods", "paramDefault<-", "paramDefault<--methods" ] }, { "page": "paramDesc-methods", "title": "Accessors for the slot paramDesc", "topics": [ "paramDesc", "paramDesc-methods", "paramDesc<-", "paramDesc<--methods" ] }, { "page": "paramFun-methods", "title": "accessors for the slot paramFun", "topics": [ "paramFun", "paramFun-methods", "paramFun<-", "paramFun<--methods" ] }, { "page": "paramMax-methods", "title": "Accessors for the slot paramMax.", "topics": [ "paramMax", "paramMax-methods", "paramMax<-", "paramMax<--methods" ] }, { "page": "paramMin-methods", "title": "Accessors for slot paramMin.", "topics": [ "paramMin", "paramMin-methods", "paramMin<-", "paramMin<--methods" ] }, { "page": "paramName-methods", "title": "Accessors for the slot paramName.", "topics": [ "paramName", "paramName-methods", "paramName<-", "paramName<--methods" ] }, { "page": "paramType-methods", "title": "Accessors for the slot paramType.", "topics": [ "paramType", "paramType-methods", "paramType<-", "paramType<--methods" ] }, { "page": "paramValues-methods", "title": "Accessor for the slot paramValues.", "topics": [ "paramValues", "paramValues-methods", "paramValues<-", "paramValues<--methods" ] }, { "page": "persistent-methods", "title": "Accessors for the slot persistent.", "topics": [ "persistent", "persistent-methods", "persistent<-", "persistent<--methods" ] }, { "page": "physicalPositions-methods", "title": "Accessors for the slot physicalPositions", "topics": [ "physicalPositions", "physicalPositions-methods", "physicalPositions<-", "physicalPositions<--methods" ] }, { "page": "plotMarkers-methods", "title": "plotMarkers", "topics": [ "plotMarkers", "plotMarkers-methods" ] }, { "page": "plotModel-methods", "title": "plotModel", 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